PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof008864
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family AP2
Protein Properties Length: 279aa    MW: 30165.5 Da    PI: 8.1227
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Saccharum_officinarum-85489PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.44.8e-1552102155
        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                s+y+GV+ +k  grW+A+   +     +k+++lg f+t+eeAa+a+++a+ k +g
  Sof008864  52 SKYRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDTEEEAARAYDRAAIKCNG 102
                89********.7******5553..2.26**********************99776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.57E-2752112No hitNo description
SuperFamilySSF541718.5E-1952112IPR016177DNA-binding domain
PfamPF008474.9E-1152102IPR001471AP2/ERF domain
SMARTSM003801.2E-3353116IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-1753110IPR001471AP2/ERF domain
PROSITE profilePS5103216.48953110IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
RAAIKFRGVE ADINFSLEDY QDDMKQQMGH LSKEEFVHVL RRQSTGLPRG SSKYRGVTLH  60
KCGRWEARMG QFLGKKYVYL GLFDTEEEAA RAYDRAAIKC NGKDAVTNFD PSIYAEELEP  120
AAATGGGADD EHNLDLSLGS SAGNKRGSLD GGGDDETSDQ RIPMAFDIDW QTAAPRSTKA  180
KLDASSKQPQ MLPPPPPALQ VAQHLPLPFS PKHPEILNHG DPGTAGGLSL RSAARPAEAK  240
AAIALPTCSI RKSHHHTTKG LTGGTTIGRR RQNPAEPAX
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.43080.0bud| callus| crown| inflorescence| root| stem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008667877.11e-139PREDICTED: putative AP2/EREBP transcription factor superfamily protein isoform X2
SwissprotP479271e-76AP2_ARATH; Floral homeotic protein APETALA 2
TrEMBLB8A3P61e-136B8A3P6_MAIZE; Uncharacterized protein
STRINGGRMZM2G174784_P011e-135(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.21e-68AP2 family protein